Message Passing Clustering (MPC)

Huimin Geng

Department of Pathology and Microbiology

University of Nebraska Medical Center

Omaha, NE 68198

(402)554-6004

hgeng@mail.unomaha.edu

MPC User's Manual

MPC Software Download:

MPC Software: MPC

Tree View Software: NJplot(rooted), NJplot(un-rooted)

Sample Input Files: feature matrix,

                               distance/similarity matrix: square matrix, triangular matrix

Sample Output Files:   tree.txt, cluster.txt 

Sample Tree View: rooted, un-rooted

Supplements for MPC Paper:

Simulated Data (giving one exaple):  Input matrix,  Dendrogram

Mycobacterium:  DNA sequences, Distance Matrix

Yeast Cell-cycle Gene Expression Data: text

        Colon Cancer Gene Expression Data: text, excel